Marathon Boutique Hotels


Show on map

If You Are in a Hurry

Here’s a quick list of the best hotels in Marathon

Seascape Resort & Marina (Marathon)
Seascape Resort & Marina (Marathon)
CHECK AVAILABILITY
Updated WATERFRONT, pool, tiki bar, boat ramp, etc
Updated WATERFRONT, pool, tiki bar, boat ramp, etc
CHECK AVAILABILITY
Hampton Inn Marathon - Florida Keys
Hampton Inn Marathon - Florida Keys
CHECK AVAILABILITY
Paradise Point ~ Pool ~ Dock ~ Lounges ~ BBQ
Paradise Point ~ Pool ~ Dock ~ Lounges ~ BBQ
CHECK AVAILABILITY
Siesta Motel (Marathon)
Siesta Motel (Marathon)
CHECK AVAILABILITY
Show More

Tucked between the turquoise waters of the Atlantic and the Gulf, Marathon’s boutique hotels deliver intimate, design-forward stays that highlight local charm—think waterfront rooms, personalized service, and easy access to snorkeling, fishing charters, and island dining. For the best experience, book a room with an ocean view or private balcony, seek properties that arrange excursions and sustainable practices, and ask the concierge for sunrise and sunset spots plus fresh-caught seafood recommendations to make your stay authentically Keys.

Best Boutique Hotels in Marathon

Seascape Resort & Marina (Marathon)

Seascape Resort & Marina (Marathon)

Seascape Resort & Marina in Marathon, Florida is an oceanfront property featuring a private marina and an outdoor pool with ocean views; guest rooms include cable TV and Wi‑Fi, guests can snorkel and scuba dive directly from the on-site marina or use complimentary paddleboards and kayaks, and outdoor barbecue grills are available for cookouts. - Oceanfront location with private marina - Outdoor pool with ocean views - Rooms include cable TV and Wi‑Fi - Complimentary paddleboards and kayaks; on-site snorkeling and scuba access - Outdoor barbecue grills for cookouts

Check Availability

Updated WATERFRONT, pool, tiki bar, boat ramp, etc

Updated WATERFRONT, pool, tiki bar, boat ramp, etc

Check Availability

Hampton Inn Marathon - Florida Keys

Hampton Inn Marathon - Florida Keys

Check Availability

Paradise Point ~ Pool ~ Dock ~ Lounges ~ BBQ

Paradise Point ~ Pool ~ Dock ~ Lounges ~ BBQ

Paradise Point ~ Pool ~ Dock ~ Lounges ~ BBQ offers air-conditioned accommodation in Marathon with a private pool, complimentary WiFi and free on-site parking; the non-smoking holiday home is located 1.3 km from Coco Plum Beach. - Private pool - Complimentary WiFi - Free on-site parking - Non-smoking property - 1.3 km to Coco Plum Beach

Check Availability

Siesta Motel (Marathon)

Siesta Motel (Marathon)

The Siesta Motel in Marathon offers cosy, comfortable accommodations set in a tropical atmosphere just minutes from the area's top beaches and attractions; guests can relax by the outdoor swimming pool, enjoy a meal at the barbecue grills, and take advantage of easy access to Sombrero Beach, top-rated deep-sea fishing, shopping, and nearby Key West. - Convenient location near beaches and attractions - Outdoor swimming pool - Barbecue grills and tropical grounds - Close to Sombrero Beach, fishing, shopping and Key West - Comfortable, cosy rooms

Check Availability

Isla Bella Beach Resort & Spa - Florida Keys (Marathon)

Isla Bella Beach Resort & Spa - Florida Keys (Marathon)

Check Availability

Marathon Waterfront Recreational Paradise (Marathon)

Marathon Waterfront Recreational Paradise (Marathon)

Check Availability

Casa Blue Pelican.

Casa Blue Pelican.

Casa Blue Pelican is a spacious holiday home with three bedrooms, a flat-screen TV with streaming services, and a fully equipped kitchen featuring a dishwasher, oven, washing machine, microwave and toaster; guests can dine outdoors or warm up by the fireplace on colder days, and bed linen, towels and laundry service are provided. - Spacious 3-bedroom layout - Fully equipped kitchen (dishwasher, oven, microwave, toaster) - Flat-screen TV with streaming services - Outdoor dining area and fireplace - Linens, towels and laundry service included

Check Availability

Tranquility Bay Resort (Marathon)

Tranquility Bay Resort (Marathon)

Tranquility Bay Resort in Marathon, FL, is a beachfront property featuring three on-site pools—including an adult-only pool and a heated children’s pool—and offers charming guestrooms with flat-screen TVs, small refrigerators, and coffee-making facilities, while its beach homes provide en suite kitchens, 42-inch flat-screen TVs, and private laundry for a more independent stay. - Beachfront location - Three pools (adult-only and heated children’s pool) - Guestrooms with flat-screen TV, mini-fridge, and coffee maker - Beach homes with full kitchen and 42-inch TV - Private laundry available in beach homes

Check Availability

Glunz Ocean Beach Hotel and Resort (Marathon)

Glunz Ocean Beach Hotel and Resort (Marathon)

Glunz Ocean Beach Hotel and Resort in Key Colony Beach, Florida, sits on the waterfront and features an outdoor pool and a private beach area; each room includes a microwave, refrigerator and flat-screen TV, and guests have access to complimentary Wi‑Fi. - Outdoor pool - Private beach access - Free Wi‑Fi - In-room microwave and refrigerator - Flat-screen TV

Check Availability

Popular Boutique Hotels destinations

×
Travelling to Marathon?

Find your perfect place to stay!

Great locations and deals for every budget.

View Deals
NO, THANKS
Find on booking.com